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The design of this function is different, mostly relating to the lack of formatting and specific behavior changes to whitespace that happens in code when added via the text box on the overlay. There's a suggestion about this behavior here: http://xenforo.com/community/threads/add-highlighted-text-to-code-bbcode.67262/

I also can't reproduce any difference in behavior between IE and other browsers. That doesn't appear to be related to the initial bug report, so if you are seeing a different behavior, please report a new bug with all the necessary details.