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If an add-on is disable, and thus it's permissions removed from consideration when rebuilding permission, and then a permission change is made, on enabling the add-on that add-on's permissions will be missing.

"Analyze permissions" will correctly indicate that the user has permissions, but the combination cache entry will not contain those permissions.

This is because XF\AddOn\DataType\Permission::rebuildActiveChange is not implemented to add the permission change job.